IL_6PJ6_097

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAC*G(PSU)(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_097 not in the Motif Atlas

Geometric match to IL_361D_001

Geometric discrepancy: 0.3497

The information below is about IL_361D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6PJ6|1|I|G|2588
6PJ6|1|I|A|2589
6PJ6|1|I|A|2590
6PJ6|1|I|C|2591
*
6PJ6|1|I|G|2603
6PJ6|1|I|PSU|2604
6PJ6|1|I|PSU|2605
6PJ6|1|I|C|2606

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2