3D structure

PDB id
6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cryo-EM structure of E.coli 50S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GAAC*G(PSU)(PSU)C
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PJ6_097 not in the Motif Atlas
Geometric match to IL_361D_001
Geometric discrepancy: 0.3497
The information below is about IL_361D_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

6PJ6|1|I|G|2588
6PJ6|1|I|A|2589
6PJ6|1|I|A|2590
6PJ6|1|I|C|2591
*
6PJ6|1|I|G|2603
6PJ6|1|I|PSU|2604
6PJ6|1|I|PSU|2605
6PJ6|1|I|C|2606

Current chains

Chain I
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L2

Coloring options:


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