IL_6PJ6_122

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GG*CA(OMC)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_122 not in the Motif Atlas

Homologous match to IL_9DFE_092

Geometric discrepancy: 0.0943

The information below is about IL_9DFE_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6PJ6|1|I|G|2454
6PJ6|1|I|G|2455
*
6PJ6|1|I|C|2496
6PJ6|1|I|A|2497
6PJ6|1|I|OMC|2498

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain U

50S ribosomal protein L16