3D structure

PDB id
6PMO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of the Geobacillus kaustophilus glyQ T-box riboswitch discriminator domain in complex with tRNA-Gly
Experimental method
X-RAY DIFFRACTION
Resolution
2.66 Å

Loop

Sequence
GUGGAACCG*UC
Length
11 nucleotides
Bulged bases
6PMO|1|A|C|165
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53596.1
Basepair signature
cWW-L-cWW-L-L-R-L
Number of instances in this motif group
2

Unit IDs

6PMO|1|A|G|159
6PMO|1|A|U|160
6PMO|1|A|G|161
6PMO|1|A|G|162
6PMO|1|A|A|163
6PMO|1|A|A|164
6PMO|1|A|C|165
6PMO|1|A|C|166
6PMO|1|A|G|167
*
6PMO|1|A|U|185
6PMO|1|A|C|186

Current chains

Chain A
T-box riboswitch discriminator

Nearby chains

Chain B
Transfer RNA; tRNA

Coloring options:

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