IL_6PPF_007

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_007 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1453

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6PPF|1|A|C|241
6PPF|1|A|U|242
6PPF|1|A|G|243
6PPF|1|A|A|244
6PPF|1|A|G|245
6PPF|1|A|U|246
6PPF|1|A|A|247
6PPF|1|A|G|248
*
6PPF|1|A|C|256
6PPF|1|A|G|257
6PPF|1|A|A|258
6PPF|1|A|A|259
6PPF|1|A|A|260
6PPF|1|A|C|261
6PPF|1|A|G|262

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15