IL_6PPF_022

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_022 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1655

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

6PPF|1|A|U|750
6PPF|1|A|G|751
6PPF|1|A|A|752
6PPF|1|A|A|753
6PPF|1|A|G|754
*
6PPF|1|A|U|771
6PPF|1|A|G|772
6PPF|1|A|G|773
6PPF|1|A|A|774
6PPF|1|A|G|775

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2