IL_6PPF_027

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCGAG*UCCGUA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_027 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3752

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6PPF|1|A|U|995
6PPF|1|A|G|996
6PPF|1|A|C|997
6PPF|1|A|G|998
6PPF|1|A|A|999
6PPF|1|A|G|1000
*
6PPF|1|A|U|1009
6PPF|1|A|C|1010
6PPF|1|A|C|1011
6PPF|1|A|G|1012
6PPF|1|A|U|1013
6PPF|1|A|A|1014

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Z

50S ribosomal protein L30