IL_6PPF_032

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6PPF|1|A|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_032 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1927

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6PPF|1|A|U|1064
6PPF|1|A|U|1065
6PPF|1|A|A|1066
6PPF|1|A|A|1067
6PPF|1|A|G|1068
6PPF|1|A|U|1069
6PPF|1|A|G|1070
*
6PPF|1|A|C|1186
6PPF|1|A|U|1187
6PPF|1|A|A|1188
6PPF|1|A|A|1189
6PPF|1|A|A|1190

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13