IL_6PPF_033

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAAAG*CGAGUACCGGGGC

Length

20 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|G|1070
6PPF|1|A|G|1071
6PPF|1|A|A|1072
6PPF|1|A|A|1073
6PPF|1|A|A|1074
6PPF|1|A|A|1075
6PPF|1|A|G|1076
*
6PPF|1|A|C|1170
6PPF|1|A|G|1171
6PPF|1|A|A|1172
6PPF|1|A|G|1177
6PPF|1|A|U|1178
6PPF|1|A|A|1179
6PPF|1|A|C|1180
6PPF|1|A|C|1181
6PPF|1|A|G|1182
6PPF|1|A|G|1183
6PPF|1|A|G|1184
6PPF|1|A|G|1185
6PPF|1|A|C|1186

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain J

50S ribosomal protein L13