IL_6PPF_040

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUGAGUAG*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_040 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1149

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6PPF|1|A|A|1302
6PPF|1|A|U|1303
6PPF|1|A|G|1304
6PPF|1|A|A|1305
6PPF|1|A|G|1306
6PPF|1|A|U|1307
6PPF|1|A|A|1308
6PPF|1|A|G|1309
*
6PPF|1|A|U|2040
6PPF|1|A|G|2041
6PPF|1|A|A|2042
6PPF|1|A|A|2043
6PPF|1|A|A|2044
6PPF|1|A|U|2045
6PPF|1|A|U|2046

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32