IL_6PPF_041

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

6PPF|1|A|G|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_041 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2205

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

6PPF|1|A|G|1358
6PPF|1|A|G|1359
6PPF|1|A|A|1360
6PPF|1|A|A|1361
6PPF|1|A|G|1362
*
6PPF|1|A|C|1370
6PPF|1|A|G|1371
6PPF|1|A|C|1372

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22