IL_6PPF_048

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUAG*UGAUUC

Length

11 nucleotides

Bulged bases

6PPF|1|A|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_048 not in the Motif Atlas

Geometric match to IL_8B0X_094

Geometric discrepancy: 0.3731

The information below is about IL_8B0X_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6PPF|1|A|G|1482
6PPF|1|A|A|1483
6PPF|1|A|U|1484
6PPF|1|A|A|1485
6PPF|1|A|G|1486
*
6PPF|1|A|U|1599
6PPF|1|A|G|1600
6PPF|1|A|A|1601
6PPF|1|A|U|1602
6PPF|1|A|U|1603
6PPF|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains