IL_6PPF_056

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

6PPF|1|A|G|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_056 not in the Motif Atlas

Geometric match to IL_7A0S_062

Geometric discrepancy: 0.1904

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

6PPF|1|A|A|1714
6PPF|1|A|C|1715
6PPF|1|A|U|1716
6PPF|1|A|C|1717
6PPF|1|A|G|1718
6PPF|1|A|G|1719
*
6PPF|1|A|C|2019
6PPF|1|A|U|2020
6PPF|1|A|G|2021
6PPF|1|A|U|2022

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14