IL_6PPF_057

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6PPF|1|A|G|1744

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_057 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1531

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6PPF|1|A|C|1731
6PPF|1|A|G|1732
6PPF|1|A|U|1733
6PPF|1|A|A|1734
6PPF|1|A|A|1735
6PPF|1|A|C|1736
*
6PPF|1|A|G|1741
6PPF|1|A|G|1742
6PPF|1|A|A|1743
6PPF|1|A|G|1744
6PPF|1|A|A|1745
6PPF|1|A|A|1746
6PPF|1|A|G|1747

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2