IL_6PPF_060

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

6PPF|1|A|G|1830, 6PPF|1|A|A|1845, 6PPF|1|A|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_060 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1048

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6PPF|1|A|U|1827
6PPF|1|A|G|1828
6PPF|1|A|C|1829
6PPF|1|A|G|1830
6PPF|1|A|A|1831
6PPF|1|A|A|1832
6PPF|1|A|G|1833
*
6PPF|1|A|C|1842
6PPF|1|A|G|1843
6PPF|1|A|A|1844
6PPF|1|A|A|1845
6PPF|1|A|G|1846
6PPF|1|A|U|1847
6PPF|1|A|A|1848
6PPF|1|A|U|1849
6PPF|1|A|A|1850

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2