IL_6PPF_063

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6PPF|1|A|G|2267

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_063 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.3488

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6PPF|1|A|C|2110
6PPF|1|A|A|2111
6PPF|1|A|G|2112
*
6PPF|1|A|U|2265
6PPF|1|A|G|2266
6PPF|1|A|G|2267
6PPF|1|A|G|2268

Current chains

Chain A

23S rRNA

Nearby chains