IL_6PPF_064

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

6PPF|1|A|G|2232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_064 not in the Motif Atlas

Geometric match to IL_8VFS_001

Geometric discrepancy: 0.3654

The information below is about IL_8VFS_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

6PPF|1|A|C|2231
6PPF|1|A|G|2232
6PPF|1|A|C|2233
*
6PPF|1|A|G|2249
6PPF|1|A|G|2250

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2