IL_6PPF_076

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_076 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1515

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

6PPF|1|A|U|2872
6PPF|1|A|G|2873
6PPF|1|A|G|2874
6PPF|1|A|A|2875
6PPF|1|A|A|2876
6PPF|1|A|G|2877
*
6PPF|1|A|U|2890
6PPF|1|A|G|2891
6PPF|1|A|G|2892
6PPF|1|A|A|2893
6PPF|1|A|G|2894

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19