IL_6PPF_084

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGGAGGUAGAG*CUCCGAAUGCCAAUG

Length

28 nucleotides

Bulged bases

6PPF|1|A|G|909, 6PPF|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|C|899
6PPF|1|A|U|900
6PPF|1|A|U|901
6PPF|1|A|G|902
6PPF|1|A|G|903
6PPF|1|A|A|904
6PPF|1|A|G|905
6PPF|1|A|G|906
6PPF|1|A|U|907
6PPF|1|A|A|908
6PPF|1|A|G|909
6PPF|1|A|A|910
6PPF|1|A|G|911
*
6PPF|1|A|C|959
6PPF|1|A|U|960
6PPF|1|A|C|961
6PPF|1|A|C|962
6PPF|1|A|G|963
6PPF|1|A|A|964
6PPF|1|A|A|965
6PPF|1|A|U|966
6PPF|1|A|G|967
6PPF|1|A|C|968
6PPF|1|A|C|969
6PPF|1|A|A|970
6PPF|1|A|A|971
6PPF|1|A|U|972
6PPF|1|A|G|973

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain V

50S ribosomal protein L27

Chain Z

50S ribosomal protein L30