IL_6PPF_088

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAGCAGUUAGGCUG*CAUAAGGCUGAGCUGUGAUG

Length

36 nucleotides

Bulged bases

6PPF|1|A|U|1554, 6PPF|1|A|U|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|C|1514
6PPF|1|A|C|1515
6PPF|1|A|A|1516
6PPF|1|A|A|1517
6PPF|1|A|G|1518
6PPF|1|A|C|1519
6PPF|1|A|A|1520
6PPF|1|A|G|1521
6PPF|1|A|U|1522
6PPF|1|A|U|1523
6PPF|1|A|A|1524
6PPF|1|A|G|1525
6PPF|1|A|G|1526
6PPF|1|A|C|1527
6PPF|1|A|U|1528
6PPF|1|A|G|1529
*
6PPF|1|A|C|1552
6PPF|1|A|A|1553
6PPF|1|A|U|1554
6PPF|1|A|A|1555
6PPF|1|A|A|1556
6PPF|1|A|G|1557
6PPF|1|A|G|1558
6PPF|1|A|C|1559
6PPF|1|A|U|1560
6PPF|1|A|G|1561
6PPF|1|A|A|1562
6PPF|1|A|G|1563
6PPF|1|A|C|1564
6PPF|1|A|U|1565
6PPF|1|A|G|1566
6PPF|1|A|U|1567
6PPF|1|A|G|1568
6PPF|1|A|A|1569
6PPF|1|A|U|1570
6PPF|1|A|G|1571

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2