IL_6PRV_006

3D structure

PDB id

6PRV (explore in PDB, NAKB, or RNA 3D Hub)

Description

58nt RNA L11-binding domain from E. coli 23S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.71 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

6PRV|1|C|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PRV_006 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.1511

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6PRV|1|C|G|1087
6PRV|1|C|A|1088
6PRV|1|C|A|1089
6PRV|1|C|A|1090
*
6PRV|1|C|U|1101
6PRV|1|C|C|1102

Current chains

Chain C

23S rRNA

Nearby chains