IL_6Q8U_001
3D structure
- PDB id
- 6Q8U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.99 Å
Loop
- Sequence
- CGAAG(6MZ)AC*GGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6Q8U|1|A|A|7
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
6Q8U|1|A|C|4
6Q8U|1|A|G|5
6Q8U|1|A|A|6
6Q8U|1|A|A|7
6Q8U|1|A|G|8
6Q8U|1|A|6MZ|9
6Q8U|1|A|A|10
6Q8U|1|A|C|11
*
6Q8U|1|B|G|14
6Q8U|1|B|G|15
6Q8U|1|B|G|16
6Q8U|1|B|A|17
6Q8U|1|B|G|18
Current chains
- Chain A
- RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3')
- Chain B
- RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3')
Nearby chains
- Chain D
- 50S ribosomal protein L7Ae
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