IL_6Q8Y_013
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACC*GGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_013 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.3199
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6Q8Y|1|2|C|186
6Q8Y|1|2|G|187
6Q8Y|1|2|A|188
6Q8Y|1|2|C|189
6Q8Y|1|2|C|190
*
6Q8Y|1|2|G|195
6Q8Y|1|2|G|196
6Q8Y|1|2|A|197
6Q8Y|1|2|A|198
6Q8Y|1|2|G|199
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain V
- 40S ribosomal protein S8-A
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