IL_6Q8Y_041

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

6Q8Y|1|2|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_041 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.5182

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q8Y|1|2|A|817
6Q8Y|1|2|C|818
6Q8Y|1|2|G|819
6Q8Y|1|2|U|820
6Q8Y|1|2|U|821
6Q8Y|1|2|U|822
*
6Q8Y|1|2|A|850
6Q8Y|1|2|U|851
6Q8Y|1|2|C|852
6Q8Y|1|2|G|853
6Q8Y|1|2|U|854

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain T

40S ribosomal protein S6-A

Chain U

40S ribosomal protein S7-A