IL_6Q8Y_047

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6Q8Y|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_047 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.1708

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6Q8Y|1|2|U|893
6Q8Y|1|2|U|894
6Q8Y|1|2|G|895
6Q8Y|1|2|U|896
6Q8Y|1|2|C|897
6Q8Y|1|2|A|898
6Q8Y|1|2|G|899
*
6Q8Y|1|2|C|910
6Q8Y|1|2|U|911
6Q8Y|1|2|U|912
6Q8Y|1|2|G|913
6Q8Y|1|2|G|914
6Q8Y|1|2|A|915
6Q8Y|1|2|U|916
6Q8Y|1|2|U|917
6Q8Y|1|2|U|918
6Q8Y|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-B