IL_6Q8Y_052
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 6Q8Y|1|2|U|1052
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_052 not in the Motif Atlas
- Homologous match to IL_4V88_439
- Geometric discrepancy: 0.4927
- The information below is about IL_4V88_439
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6Q8Y|1|2|G|1051
6Q8Y|1|2|U|1052
6Q8Y|1|2|G|1053
*
6Q8Y|1|2|C|1066
6Q8Y|1|2|C|1067
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S17-A
- Chain P
- 40S ribosomal protein S0-A
- Chain Q
- 40S ribosomal protein S1-A
- Chain f
- 40S ribosomal protein S27-A
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