IL_6Q8Y_084

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_084 not in the Motif Atlas

Geometric match to IL_3HHN_004

Geometric discrepancy: 0.1614

The information below is about IL_3HHN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6Q8Y|1|2|G|1672
6Q8Y|1|2|G|1673
6Q8Y|1|2|C|1674
*
6Q8Y|1|2|G|1727
6Q8Y|1|2|A|1728
6Q8Y|1|2|C|1729

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A