IL_6Q8Y_090
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_090 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0651
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Q8Y|1|BQ|C|31
6Q8Y|1|BQ|U|32
6Q8Y|1|BQ|G|33
6Q8Y|1|BQ|A|34
6Q8Y|1|BQ|A|35
6Q8Y|1|BQ|C|36
6Q8Y|1|BQ|U|37
6Q8Y|1|BQ|U|38
*
6Q8Y|1|BQ|A|45
6Q8Y|1|BQ|U|46
6Q8Y|1|BQ|C|47
6Q8Y|1|BQ|A|48
6Q8Y|1|BQ|A|49
6Q8Y|1|BQ|U|50
6Q8Y|1|BQ|A|51
6Q8Y|1|BQ|A|52
6Q8Y|1|BQ|G|53
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
Coloring options: