IL_6Q8Y_092
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AU*AGUUGU
- Length
- 8 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|U|147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_092 not in the Motif Atlas
- Geometric match to IL_5TBW_007
- Geometric discrepancy: 0.1322
- The information below is about IL_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6Q8Y|1|BQ|A|123
6Q8Y|1|BQ|U|124
*
6Q8Y|1|BQ|A|144
6Q8Y|1|BQ|G|145
6Q8Y|1|BQ|U|146
6Q8Y|1|BQ|U|147
6Q8Y|1|BQ|G|148
6Q8Y|1|BQ|U|149
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: