IL_6Q8Y_095

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

6Q8Y|1|BQ|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_095 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.3603

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6Q8Y|1|BQ|U|169
6Q8Y|1|BQ|G|170
*
6Q8Y|1|BQ|U|248
6Q8Y|1|BQ|U|249
6Q8Y|1|BQ|U|250
6Q8Y|1|BQ|G|251
6Q8Y|1|BQ|U|252
6Q8Y|1|BQ|A|253

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AJ

60S ribosomal protein L13-A

Chain BP

60S ribosomal protein L35-A