IL_6Q8Y_098

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

6Q8Y|1|BQ|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_098 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.118

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6Q8Y|1|BQ|G|337
6Q8Y|1|BQ|A|338
6Q8Y|1|BQ|C|339
*
6Q8Y|1|BS|G|25
6Q8Y|1|BS|U|26

Current chains

Chain BQ

25S ribosomal RNA

Chain BS

5.8S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

60S ribosomal protein L4-A