IL_6Q8Y_099
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|398, 6Q8Y|1|BQ|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_099 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1381
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6Q8Y|1|BQ|G|376
6Q8Y|1|BQ|A|377
6Q8Y|1|BQ|A|378
6Q8Y|1|BQ|C|379
*
6Q8Y|1|BQ|G|390
6Q8Y|1|BQ|A|391
6Q8Y|1|BQ|G|392
6Q8Y|1|BQ|U|393
6Q8Y|1|BQ|G|394
6Q8Y|1|BQ|A|395
6Q8Y|1|BQ|A|396
6Q8Y|1|BQ|A|397
6Q8Y|1|BQ|A|398
6Q8Y|1|BQ|A|399
6Q8Y|1|BQ|G|400
6Q8Y|1|BQ|U|401
6Q8Y|1|BQ|A|402
6Q8Y|1|BQ|C|403
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain AL
- 60S ribosomal protein L39
- Chain AX
- 60S ribosomal protein L17-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: