IL_6Q8Y_101
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_101 not in the Motif Atlas
- Homologous match to IL_5TBW_016
- Geometric discrepancy: 0.1055
- The information below is about IL_5TBW_016
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6Q8Y|1|BQ|U|429
6Q8Y|1|BQ|U|430
6Q8Y|1|BQ|U|431
*
6Q8Y|1|BQ|A|628
6Q8Y|1|BQ|U|629
6Q8Y|1|BQ|A|630
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AU
- 60S ribosomal protein L16-A
- Chain BG
- 60S ribosomal protein L32
- Chain BK
- 60S ribosomal protein L33-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
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