IL_6Q8Y_102
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|440, 6Q8Y|1|BQ|G|494
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_102 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.4592
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
6Q8Y|1|BQ|C|435
6Q8Y|1|BQ|A|436
6Q8Y|1|BQ|G|437
6Q8Y|1|BQ|A|438
6Q8Y|1|BQ|C|439
6Q8Y|1|BQ|A|440
6Q8Y|1|BQ|G|494
6Q8Y|1|BQ|G|495
*
6Q8Y|1|BQ|C|618
6Q8Y|1|BQ|A|619
6Q8Y|1|BQ|U|620
6Q8Y|1|BQ|A|621
6Q8Y|1|BQ|A|622
6Q8Y|1|BQ|U|623
6Q8Y|1|BQ|G|624
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AX
- 60S ribosomal protein L17-A
- Chain BG
- 60S ribosomal protein L32
- Chain BK
- 60S ribosomal protein L33-A
- Chain BM
- 60S ribosomal protein L6-A
Coloring options: