IL_6Q8Y_111

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_111 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1481

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6Q8Y|1|BQ|C|758
6Q8Y|1|BQ|U|759
6Q8Y|1|BQ|G|760
6Q8Y|1|BQ|A|761
6Q8Y|1|BQ|U|762
6Q8Y|1|BQ|G|763
*
6Q8Y|1|BQ|C|768
6Q8Y|1|BQ|G|769
6Q8Y|1|BQ|G|770
6Q8Y|1|BQ|A|771
6Q8Y|1|BQ|U|772
6Q8Y|1|BQ|G|773

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A

Chain AP

60S ribosomal protein L42-A

Chain AR

60S ribosomal protein L28