3D structure

PDB id
6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUU*GUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q8Y_129 not in the Motif Atlas
Homologous match to IL_8C3A_047
Geometric discrepancy: 0.0742
The information below is about IL_8C3A_047
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6Q8Y|1|BQ|C|1069
6Q8Y|1|BQ|U|1070
6Q8Y|1|BQ|U|1071
*
6Q8Y|1|BQ|G|1087
6Q8Y|1|BQ|U|1088
6Q8Y|1|BQ|G|1089

Current chains

Chain BQ
25S ribosomal RNA

Nearby chains

Chain AV
60S ribosomal protein L29
Chain BJ
60S ribosomal protein L21-A

Coloring options:


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