IL_6Q8Y_137
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|U|1208
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_137 not in the Motif Atlas
- Homologous match to IL_8C3A_056
- Geometric discrepancy: 0.1485
- The information below is about IL_8C3A_056
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6Q8Y|1|BQ|G|1207
6Q8Y|1|BQ|U|1208
6Q8Y|1|BQ|G|1209
*
6Q8Y|1|BQ|C|1296
6Q8Y|1|BQ|C|1297
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L9-A
- Chain AO
- Ubiquitin-60S ribosomal protein L40
- Chain BD
- 60S ribosomal protein L10
- Chain BH
- 60S ribosomal protein L20-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
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