IL_6Q8Y_139

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6Q8Y|1|BQ|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_139 not in the Motif Atlas

Geometric match to IL_4V88_457

Geometric discrepancy: 0.3457

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6Q8Y|1|BQ|G|1262
6Q8Y|1|BQ|A|1263
6Q8Y|1|BQ|G|1264
6Q8Y|1|BQ|U|1265
6Q8Y|1|BQ|G|1266
*
6Q8Y|1|BQ|C|1275
6Q8Y|1|BQ|U|1276
6Q8Y|1|BQ|C|1277

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains