IL_6Q8Y_142
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_142 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.0801
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
6Q8Y|1|BQ|U|1388
6Q8Y|1|BQ|G|1389
6Q8Y|1|BQ|A|1390
6Q8Y|1|BQ|C|1391
6Q8Y|1|BQ|G|1392
6Q8Y|1|BQ|A|1393
6Q8Y|1|BQ|A|1394
6Q8Y|1|BQ|G|1395
*
6Q8Y|1|BQ|U|1415
6Q8Y|1|BQ|C|1416
6Q8Y|1|BQ|G|1417
6Q8Y|1|BQ|A|1418
6Q8Y|1|BQ|A|1419
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain AX
- 60S ribosomal protein L17-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BG
- 60S ribosomal protein L32
- Chain BM
- 60S ribosomal protein L6-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
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