IL_6Q8Y_145

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

6Q8Y|1|BQ|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_145 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.0849

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6Q8Y|1|BQ|G|1500
6Q8Y|1|BQ|U|1501
6Q8Y|1|BQ|C|1502
6Q8Y|1|BQ|A|1503
6Q8Y|1|BQ|A|1504
6Q8Y|1|BQ|C|1505
*
6Q8Y|1|BQ|G|1513
6Q8Y|1|BQ|G|1514
6Q8Y|1|BQ|A|1515
6Q8Y|1|BQ|C|1516

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L39

Chain AX

60S ribosomal protein L17-A

Chain BF

60S ribosomal protein L19-A