IL_6Q8Y_147

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_147 not in the Motif Atlas

Geometric match to IL_5TBW_375

Geometric discrepancy: 0.2403

The information below is about IL_5TBW_375

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6Q8Y|1|BQ|G|1561
6Q8Y|1|BQ|C|1562
6Q8Y|1|BQ|C|1563
*
6Q8Y|1|BQ|G|1577
6Q8Y|1|BQ|C|1578

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AH

60S ribosomal protein L25

Chain AW

60S ribosomal protein L2-A