IL_6Q8Y_190

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_190 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1281

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6Q8Y|1|BQ|U|2835
6Q8Y|1|BQ|C|2836
6Q8Y|1|BQ|A|2837
6Q8Y|1|BQ|A|2838
6Q8Y|1|BQ|G|2839
*
6Q8Y|1|BQ|C|2849
6Q8Y|1|BQ|G|2850
6Q8Y|1|BQ|A|2851
6Q8Y|1|BQ|C|2852
6Q8Y|1|BQ|A|2853

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain BD

60S ribosomal protein L10