IL_6Q8Y_201

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAAUU*ACCAU

Length

11 nucleotides

Bulged bases

6Q8Y|1|BQ|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q8Y|1|BQ|A|3046
6Q8Y|1|BQ|U|3047
6Q8Y|1|BQ|A|3048
6Q8Y|1|BQ|A|3049
6Q8Y|1|BQ|U|3050
6Q8Y|1|BQ|U|3051
*
6Q8Y|1|BQ|A|3091
6Q8Y|1|BQ|C|3092
6Q8Y|1|BQ|C|3093
6Q8Y|1|BQ|A|3094
6Q8Y|1|BQ|U|3095

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AE

60S ribosomal protein L24-A

Chain BA

60S ribosomal protein L3