IL_6Q8Y_209

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6Q8Y|1|BQ|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_209 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.1502

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6Q8Y|1|BQ|C|3193
6Q8Y|1|BQ|C|3194
*
6Q8Y|1|BQ|G|3197
6Q8Y|1|BQ|U|3198
6Q8Y|1|BQ|G|3199

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AM

60S ribosomal protein L14-A

Chain AU

60S ribosomal protein L16-A