IL_6Q8Y_210
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAACG*UUG
- Length
- 8 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|U|3259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_210 not in the Motif Atlas
- Homologous match to IL_8C3A_133
- Geometric discrepancy: 0.0878
- The information below is about IL_8C3A_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60154.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
6Q8Y|1|BQ|C|3225
6Q8Y|1|BQ|A|3226
6Q8Y|1|BQ|A|3227
6Q8Y|1|BQ|C|3228
6Q8Y|1|BQ|G|3229
*
6Q8Y|1|BQ|U|3258
6Q8Y|1|BQ|U|3259
6Q8Y|1|BQ|G|3260
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AM
- 60S ribosomal protein L14-A
- Chain AU
- 60S ribosomal protein L16-A
- Chain BM
- 60S ribosomal protein L6-A
Coloring options: