IL_6Q8Y_234
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCCAGCGA*UUGUGAAACU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q8Y|1|2|A|1479
6Q8Y|1|2|G|1480
6Q8Y|1|2|C|1481
6Q8Y|1|2|C|1482
6Q8Y|1|2|A|1483
6Q8Y|1|2|G|1484
6Q8Y|1|2|C|1485
6Q8Y|1|2|G|1486
6Q8Y|1|2|A|1487
*
6Q8Y|1|2|U|1519
6Q8Y|1|2|U|1520
6Q8Y|1|2|G|1521
6Q8Y|1|2|U|1522
6Q8Y|1|2|G|1523
6Q8Y|1|2|A|1524
6Q8Y|1|2|A|1525
6Q8Y|1|2|A|1526
6Q8Y|1|2|C|1527
6Q8Y|1|2|U|1528
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain B
- Rps5p
- Chain F
- 40S ribosomal protein S16-A
- Chain I
- 40S ribosomal protein S19-A
- Chain J
- 40S ribosomal protein S20
- Chain K
- 40S ribosomal protein S25-A
- Chain M
- 40S ribosomal protein S29-A
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