3D structure

PDB id
6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAUUCUUC*GGAAUAGUU
Length
17 nucleotides
Bulged bases
6Q8Y|1|BQ|U|1629, 6Q8Y|1|BQ|A|1813, 6Q8Y|1|BQ|U|1815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q8Y|1|BQ|G|1624
6Q8Y|1|BQ|A|1625
6Q8Y|1|BQ|U|1626
6Q8Y|1|BQ|U|1627
6Q8Y|1|BQ|C|1628
6Q8Y|1|BQ|U|1629
6Q8Y|1|BQ|U|1630
6Q8Y|1|BQ|C|1631
*
6Q8Y|1|BQ|G|1811
6Q8Y|1|BQ|G|1812
6Q8Y|1|BQ|A|1813
6Q8Y|1|BQ|A|1814
6Q8Y|1|BQ|U|1815
6Q8Y|1|BQ|A|1816
6Q8Y|1|BQ|G|1817
6Q8Y|1|BQ|U|1818
6Q8Y|1|BQ|U|1819

Current chains

Chain BQ
25S ribosomal RNA

Nearby chains

Chain AN
60S ribosomal protein L27-A

Coloring options:

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