IL_6Q8Y_237
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUCUUC*GGAAUAGUU
- Length
- 17 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|U|1629, 6Q8Y|1|BQ|A|1813, 6Q8Y|1|BQ|U|1815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q8Y|1|BQ|G|1624
6Q8Y|1|BQ|A|1625
6Q8Y|1|BQ|U|1626
6Q8Y|1|BQ|U|1627
6Q8Y|1|BQ|C|1628
6Q8Y|1|BQ|U|1629
6Q8Y|1|BQ|U|1630
6Q8Y|1|BQ|C|1631
*
6Q8Y|1|BQ|G|1811
6Q8Y|1|BQ|G|1812
6Q8Y|1|BQ|A|1813
6Q8Y|1|BQ|A|1814
6Q8Y|1|BQ|U|1815
6Q8Y|1|BQ|A|1816
6Q8Y|1|BQ|G|1817
6Q8Y|1|BQ|U|1818
6Q8Y|1|BQ|U|1819
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AN
- 60S ribosomal protein L27-A
Coloring options: