IL_6Q9A_018

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

6Q9A|1|1|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_018 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2835

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6Q9A|1|1|U|702
6Q9A|1|1|U|703
6Q9A|1|1|G|704
6Q9A|1|1|A|705
6Q9A|1|1|A|706
6Q9A|1|1|G|707
*
6Q9A|1|1|U|724
6Q9A|1|1|G|725
6Q9A|1|1|G|726
6Q9A|1|1|A|727
6Q9A|1|1|G|728
6Q9A|1|1|G|729
6Q9A|1|1|A|730

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2