IL_6Q9A_067

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAGGU*AUGGAGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_067 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.3431

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6Q9A|1|1|G|1719
6Q9A|1|1|U|1720
6Q9A|1|1|G|1721
6Q9A|1|1|A|1722
6Q9A|1|1|G|1723
6Q9A|1|1|G|1724
6Q9A|1|1|U|1725
*
6Q9A|1|1|A|1735
6Q9A|1|1|U|1736
6Q9A|1|1|G|1737
6Q9A|1|1|G|1738
6Q9A|1|1|A|1739
6Q9A|1|1|G|1740
6Q9A|1|1|C|1741

Current chains

Chain 1

23S ribosomal RNA

Nearby chains