IL_6Q9A_084

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

6Q9A|1|1|U|2111, 6Q9A|1|1|G|2112, 6Q9A|1|1|G|2116, 6Q9A|1|1|U|2118, 6Q9A|1|1|C|2178

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q9A|1|1|G|2110
6Q9A|1|1|U|2111
6Q9A|1|1|G|2112
6Q9A|1|1|U|2113
6Q9A|1|1|A|2114
6Q9A|1|1|G|2115
6Q9A|1|1|G|2116
6Q9A|1|1|A|2117
6Q9A|1|1|U|2118
6Q9A|1|1|A|2119
6Q9A|1|1|G|2120
6Q9A|1|1|G|2121
*
6Q9A|1|1|C|2177
6Q9A|1|1|C|2178
6Q9A|1|1|C|2179

Current chains

Chain 1

23S ribosomal RNA

Nearby chains