IL_6Q9A_085

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGGGAG*CGACCUUGAAAUACCAC

Length

24 nucleotides

Bulged bases

6Q9A|1|1|C|2164, 6Q9A|1|1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q9A|1|1|G|2121
6Q9A|1|1|U|2122
6Q9A|1|1|G|2123
6Q9A|1|1|G|2124
6Q9A|1|1|G|2125
6Q9A|1|1|A|2126
6Q9A|1|1|G|2127
*
6Q9A|1|1|C|2161
6Q9A|1|1|G|2162
6Q9A|1|1|A|2163
6Q9A|1|1|C|2164
6Q9A|1|1|C|2165
6Q9A|1|1|U|2166
6Q9A|1|1|U|2167
6Q9A|1|1|G|2168
6Q9A|1|1|A|2169
6Q9A|1|1|A|2170
6Q9A|1|1|A|2171
6Q9A|1|1|U|2172
6Q9A|1|1|A|2173
6Q9A|1|1|C|2174
6Q9A|1|1|C|2175
6Q9A|1|1|A|2176
6Q9A|1|1|C|2177

Current chains

Chain 1

23S ribosomal RNA

Nearby chains